By default, only the start and
stop codons
at the beginnings and ends of open reading frames are shown in the frame display.
The rare codon display rare
codons in each reading frame
are marked below the open reading frame plot.
The second mutation introduces a
premature stop codon
in the mature protein 34.
Codon usage
' of the organism.
The coding region begins with the
initiation codon, which is normally atg.
The second mutation
introduces a premature stop codon
in the mature protein 34.
In both plots, the positions of
rare codons
are indicated by dots above each translation frame.
Codon frequency
table with a text editor.
It ends with one of three
termination codons: taa, tag or tga.
Normally, a pipe character is put between a codon and an amino acid when the
translated codon
is identical to the amino acid.
Output
potential start codons
are written only in lowercase letters.
Codon preference.
The second mutation introduces a premature
stop codon
in the mature protein 34.
The output table is a file with the sum of all the observations for each of the 64
possible codons.
Codon bias.
Mark
start codons
- color can be changed in the options file.
We recommend that gene sequences be numbered so that the first base of the
first codon
is numbered zero.
Codon frequency table
with a text editor.
The glycoprotein gene has a
translation stop codon
in the middle of it, preventing the synthesis of the full length protein.
Codon preference statistic
comes from gribskov et al.
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